how to read a fasta file in python? - Stack Overflow
Dec 14, 2013 · how to read a fasta file in python? Asked 12 years ago Modified 3 years, 5 months ago Viewed 42k times
learning to parse a fasta file with python - Stack Overflow
I am learning python and I want to parse a fasta file without using BioPython. My txt file looks like:
Python : read and print sequence from a fasta file
Apr 21, 2020 · Python : read and print sequence from a fasta file Asked 5 years, 7 months ago Modified 5 years, 5 months ago Viewed 3k times
Using Biopython (Python) to extract sequence from FASTA file
May 21, 2015 · Biopython is just perfect for these kinds of tasks. The Seq -Object stores a sequence and info about it. Reading the fasta file format is straight forward. You can access …
Reading a fasta file format into python dictionary
fasta.setdefault(sequence_name, []).append(line) First of all, file objects are iterators, so you don't really need to read them in (via the file.read() method) if you only need to do it once.
python - Read user inputted .fasta file and parse using Biopython ...
The purpose of the script is to take a fasta file, parse and trim primers. I know there is an easy method to do this using Biopython entirely but as per instruction Biopython can only be used to …
python - SeqIO.parse on a fasta.gz - Stack Overflow
Mar 13, 2017 · New to coding. New to Pytho/biopython; this is my first question online, ever. How do I open a compressed fasta.gz file to extract info and perform calcuations in my function. …
Read FASTA into a dataframe and extract subsequences of FASTA …
May 14, 2019 · 1) How can I read this fasta file into R as a dataframe where each row is a sequence record, the 1st column is the refseqID and the 2nd column is the sequence. 2) How …
python - how to convert fasta file into a pandas dataframe? - Stack ...
Nov 3, 2021 · how to convert fasta file into a pandas dataframe? Asked 4 years, 1 month ago Modified 4 years, 1 month ago Viewed 2k times
python 3.x - How to parse fasta string using Seq.IO from …
Apr 2, 2021 · I need to use a fasta string instead of fasta file to parse it in Seq.IO in python3 from Bio import SeqIO fasta_string = '>name\\nACCTGTGGCTGCTTGCTTGCTTGGGCT' rec = …